Development of PCRSeqTyping—a novel molecular assay for typing of Streptococcus pneumoniae

Nagaraj, Geetha; Ganaie, Feroze; Govindan, Vandana; Ravikumar, Kadahalli Lingegowda

doi:10.1186/s41479-017-0032-3

Pneumonia

Table 1 PCRseqtyping results for 91 SSI strains

From: Development of PCRSeqTyping—a novel molecular assay for typing of Streptococcus pneumoniae

Sl. NO	Serogroup	Serotype	NCBI ACCESSION NO	PCRSeqTyping results
				Step I	Step 2
1	1	1	CR931632	1
2	2	2	CR931632	2/41A	2
3	3	3	CR931634	3
4	4	4	CR931635	4
5	5	5	CR931637	5
6	6	6A	CR931638	6A
7		6B	CR931639	6B
8		6C	EF538714	6C
9	7	7 F	CR931643	7 F
10		7A	CR931640	7A
11		7B	CR931641	7B/40	7B
12		7C	CR931642	7C
13	8	8	CR931644	8
14	9	9A	CR931645	9A/9 V	9A
15		9 L	CR931646	9 L
16		9 N	CR931647	9 N
17		9 V	CR931648	9A/9 V	9 V
18	10	10 F	CR931652	10 F/10C	10 F
19		10A	CR931649	10A
20		10B	CR931650	10B
21		10C	CR931651	10 F/10C	10C
22	11	11 F	CR931657	11 F
23		11A	CR931653	11A/11D/18 F	11A
24		11B	CR931654	11B
25		11C	CR931655	11C
26		11D	CR931656	11A/11D/18 F	11D
27	12	12 F	CR931660	12 F/44	12 F
28		12A	CR931658	12A
29		12B	CR931659	12B
30	13	13	CR931661	13/20	13
31	14	14	CR931662	14
32	15	15 F	CR931666	15 F
33		15A	CR931663	15A
34		15B	CR931664	15B
35		15C	CR931665	15C
36	16	16 F	CR931668	16 F
37	16	16A	CR931667	16A
38	17	17 F	CR931670	17 F
39	17	17A	CR931669	17A/34	17A
40	18	18 F	CR931674	11A/11D/18 F	18 F
41		18A	CR931671	18A
42		18B	CR931672	18B
43		18C	CR931673	18C
44	19	19 F	CR931678	19 F
45		19A	CR931675	19A
46		19B	CR931676	19B
47		19C	CR931677	19C
48	20	20	CR931679	13/20	20
49	21	21	CR931680	21
50	22	22 F	CR931682	22 F/22A	22 F
51	22	22A	CR931681	22 F/22A	22A
52	23	23 F	CR931685	23 F
53		23A	CR931683	23A
54		23B	CR931684	23B
55	24	24 F	CR931688	24 F
56		24A	CR931686	24A
57		24B	CR931687	24B
58	25	25 F	CR931690	25 F/25A	25 F
59	25	25A	CR931689	25 F/25A	25A
60	27	27	CR931691	27
61	28	28 F	CR931693	28 F
62		28A	CR931692	28A
63	29	29	CR931694	29
64	31	31	CR931695	31
65	32	32 F	CR931697	32 F/32A	32 F
66	32	32A	CR931696	32 F/32A	32A
67	33	33 F	CR931702	33 F/33A/35A	33 F
68		33A	CR931698	33A
69		33B	CR931699	33B
70		33C	CR931700	33C
71		33D	CR931701	33D
72	34	34	CR931703	17A/34	34
73	35	35 F	CR931707	35 F/47 F	35 F
74		35A	CR931704	33 F/33A/35A	35A
75		35B	CR931705	35B/35C	35B
76		35C	CR931706	35B/35C	35C
77	36	36	CR931708	36
78	37	37	CR931709	37
79	38	38	CR931710	38
80	39	39	CR931711	39
81	40	40	CR931712	7B/40	40
82	41	41 F	CR931714	41 F
83	41	41A	CR931713	2/41A	41A
84	42	42	CR931715	42
85	43	43	CR931716	43
86	44	44	CR931717	44
87	45	45	CR931718	45
88	46	46	CR931719	46
89	47	47 F	CR931721	35 F/47 F	47 F
90	47	47A	CR931720	47A
91	48	48	CR931722	48

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ISSN: 2200-6133

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