Risk factors for community-acquired pneumonia among adults in Kenya: a case–control study
© The Author(s) 2017
Received: 25 April 2017
Accepted: 17 October 2017
Published: 25 November 2017
Pneumonia is a leading cause of morbidity and mortality among adults worldwide; however, the risk factors for community-acquired pneumonia in Africa are not well characterized.
The authors recruited 281 cases of community-acquired pneumonia and 1202 hospital controls among patients aged ≥15 years who attended Kilifi District Hospital/Coast Provincial General Hospital in Kenya between 1994 and 6. Cases were admissions with an acute illness with ≥2 respiratory signs and evidence of consolidation on a chest radiograph. Controls were patients without signs of pneumonia, frequency matched by age, sex and hospital. Risk factors related to socio-demographic factors, drug use, clinical history, contact patterns and exposures to indoor air pollution were investigated by questionnaire, anthropometric measurements and laboratory assays. Associations were evaluated using a hierarchical logistic regression model.
Pneumonia was associated with human immunodeficiency virus (HIV) infection (Odds Ratio [OR] 2.06, 95% CI 1.44–3.08), anemia (OR 1.91, 1.31–2.74), splenomegaly (OR 2.04, 95% CI 1.14–3.41), recent history of pneumonia (OR 4.65, 95% CI 1.66–12.5), history of pneumonia >2 years previously (OR 17.13, 95% CI 5.01–60.26), coryza in the 2 weeks preceding hospitalization (OR 2.09, 95% CI 1.44–3.03), current smoking (2.19, 95% CI 1.39–3.70), use of khat (OR 3.44, 95% CI 1.72–7.15), use of snuff (OR 2.67, 95% CI 1.35–5.49) and contact with several animal species. Presence of a Bacillus Calmette-Guerin (BCG) scar was associated with protection (OR 0.51, 95% CI 0.32–0.82). The risk factors varied significantly by sex.
Pneumonia in Kenyan adults was associated with global risk factors, such as HIV and smoking, but also with specific local factors like drug use and contact with animals. Intervention strategies should account for sex-specific differences in risk factors.
Community-acquired pneumonia (CAP) is a common cause of morbidity and mortality worldwide. In Africa, CAP is associated with an in-hospital mortality of 6–15% among adults, as reported from hospital-based studies [1–3].
Studies from high-income countries have identified several risk factors for CAP including smoking [4–7], age > 65 years [4, 8, 9], immunosuppression by any cause , underlying lung diseases such as chronic obstructive pulmonary disease (COPD) [7–10], recent viral upper respiratory infections (URTI) [11–13] and the presence of co-morbidities . In addition, low body-mass index (BMI), contact with children and poor dental hygiene were identified as risk factors for CAP in a systematic literature review and meta-analysis from studies in Europe .
Different environmental and socio-economic circumstances in sub-Saharan Africa are likely to give rise to different risks for pneumonia, including younger age at presentation, which has been observed . There is a single published study of pneumonia risk factors in tropical Africa, which is confined to human immunodeficiency virus (HIV)-infected adults in Kenya. This identified additional risk factors as being single, widowed or divorced (i.e. not married), being of low socio-economic status and experiencing overcrowding in the home . Here the authors present an analysis of a previously unpublished dataset from 1994 to 1996, exploring the risk factors for pneumonia among adults in Kenya.
This case–control study was conducted at Kilifi District Hospital (KDH), and Coast Provincial General Hospital (CPGH) in Kenya among patients who presented either to the outpatient clinic or the casualty department. Cases were adult patients aged ≥15 years who were admitted with CAP. CAP was defined as an acute illness (<14 days), characterized by at least two respiratory symptoms (cough, sputum, breathlessness, chest pain, hemoptysis or fever) and evidence of consolidation on a chest radiograph. The radiographs were read by a study physician and later confirmed, independently, by a consultant thoracic radiologist.
Controls were adults aged ≥15 years who presented to the outpatient clinics of the same hospitals who did not meet the clinical case definition of CAP. They were frequency matched on age, sex and hospital of presentation in a ratio of 4:1 with cases. Controls with diagnoses that were strongly associated with the exposures of interest (e.g. meningitis, septicemia, tuberculosis, Kaposi’s sarcoma, sickle cell crisis, diabetic ketoacidosis or oropharyngeal candidiasis) were excluded.
A target sample size of 1500 (300 cases: 1200 controls) was sought for the study. The study was powered to detect relevant odds ratios using a range of prevalence estimates for a wide variety of exposures included in the study (Additional file 1).
Patients were questioned on clinical history, lifestyle habits and contact history using a standard questionnaire. Anthropometry and a physical examination were performed for all participants in a standardized manner. Venous blood was collected and tested for HIV-1 antibodies by enzyme-linked immunosorbent assay (ELISA), malaria parasites by microscopy, and sickle cell status. A full hemogram, glycosylated hemoglobin (HbA1C) test and blood grouping (ABO) were also performed.
Variable categories for the intermediary logistic regression models
Ethnic group, religion, recent immigration, years of education, monthly income, type of house and employment status
Number of children in the household, contact with children of different ages, with or without an URTI, number of adults in the household, size of house, hours of childcare, sharing a room with children when sleeping, contact with a case of pneumonia, recent travel beyond the immediate residential vicinity, use of public minibuses for transport (matatu), frequenting social places and contact with selected animals, working and living in different locations
Quantified alcohol consumption and use of traditional brews (matingas, busaa, changaa, mnazi, muratina), quantified present and past cigarette smoking, use of ground tobacco (snuff), use of Khat (miraa).
Indoor air pollution
Exposure to cooking fuel smoke in the home, use of mosquito coils, ventilation in the cooking room, use of air conditioning, passive smoking and occupational exposure during welding
Chronic bronchitis, recent history of viral URTI (<14 days), previous history of pulmonary TB, previous pneumonia, body mass index, mid upper-arm circumference, anemia, splenomegaly, malaria parasitemia, sickle cell status, HIV sero-positivity, ABO blood group, Glycosylated hemoglobin (HbA1c) and current pregnancy status.
Some variables, e.g. BMI and presence of a scar following Bacillus Calmette-Guerin (BCG) vaccine, were introduced shortly after the study had begun, leading to some missing data (Additional file 1). However, this is unlikely to have caused bias unless there was a systematic difference in the admissions across the time periods of the study; therefore, data imputation was not used.
All statistical analysis were performed using STATA V.13 (Stata Corp, College Station, Texas, United States [US]).
Distribution of matching variables across cases and controls
Route of recruitment
CPGH Filter clinic
Kilifi District Hospital
Risk factors for pneumonia in intermediate and final regression models
History of coryza
Presence of BCG scar
History of previous pneumonia
> 2 yrs. ago
< 2 yrs. ago
Level of education
More than one ventilations in cooking roomc (n = 1036)
Smoking pack years
Work and lives in different locations
Visited a disco in the last 2 weeks
Visited a café in last 2 weeks
Used a matatu in last 2 weeks
Exposure to ducks
Exposure to goats
Exposure to chickens
Exposure to monkeys
Previous history of pneumonia was a major risk factor for current pneumonia. This risk was almost 20-fold higher among those whose history of pneumonia was more than 2 years ago (Table 3). History of previous URTI, HIV infection, splenomegaly and anemia were all associated with a 2-fold increase in risk of pneumonia; HIV was present in 30% (356/1202) of the controls. Malaria and presence of a BCG scar was associated with a reduced risk of pneumonia. The risk of pneumonia was reduced by 35% for every cm increase in mid-upper arm circumference (MUAC, Table 3, Additional file 1: Table S4). For most of the significant clinical variables, there was no evidence of confounding by variables in other categories as the effect sizes varied little between intermediary and final models. Of note from the univariate analyses, there was no association between pneumonia and sickle cell trait, Blood group A or history of previous tuberculosis (Additional file 1: Table S4).
In the intermediate model, pneumonia was inversely associated with the number of years in education and with current employment. However, these associations did not remain significant in the final model. In the univariate analysis, there was no evidence of an association between pneumonia and ethnicity, religion or economic status measured either as amount of income or type of roofing (Additional file 1: Table S5).
Air pollution and related factors
Among a wide range of air-pollution variables, only two were significant in the univariate analyses; cooking in a room with only one ventilation exit (the door) was more common among cases; cooking for oneself was more common among controls (Additional file 1: Table S6). Pneumonia was not associated with indoor cooking, nor sleeping in the cooking room, nor with the type of fuel used for cooking.
Drug use and related factors
The prevalence of drug use differed by sex. Males accounted for 87% (268/307) of alcohol consumers and 97% (312/321) of current smokers. Females were the largest consumers of snuff (60% vs. 40% in males), but did not report consumption of busaa and matingas (traditional brews). Current smokers and ex-smokers had a 2-fold increased risk of pneumonia compared to never-smokers; recent ex-smokers had a 10-fold increase in risk (Table 3). There was no evidence of increased risk with an increase in smoking pack-years. Passive smoking and alcohol intake were not associated with pneumonia.
Exposure to animals was reported in 43% (519/1202) of the controls. Significant associations in the intermediary model included exposure to monkeys, chickens, ducks and goats, of which only the latter two remained significant in the final model (Table 3). Adults frequenting cafés or working at a different location from home were at slightly increased risk of pneumonia; those using public minibuses (matatus) or visiting nightclubs had lower risks of pneumonia. In the univariate analysis, pneumonia was associated with the total number of other people in the home, and with the number of co-resident girls aged <5y. Contact with a child under the age of 5 years with coryza or sleeping in the same room as a child were not associated with pneumonia.
Risk factors by sex
Risk factors for pneumonia by sex
History of coryza
Presence of BCG scar
Previous history of pneumonia
Pneumonia >2 yrs. ago
Pneumonia <2 yrs. ago
Previous history of TB infection
TB >2 yrs. ago
TB <2 yrs. ago
Exposure to chickens
Exposure to ducks
Exposure to sheep
These results suggest that several of the risk factors for pneumonia are common to both developed and developing countries. These include smoking tobacco, exposure to animals, recent URTI and anemia. The results have also identified novel modifiable risk factors, such as the use of snuff (ground tobacco) and khat, which are particular to this population.
Smoking is a well-established risk factor for CAP [7, 16]. The risk was highest among recent ex-smokers; this was interpreted to mean that their decision to stop smoking was influenced by an ailing respiratory system—a form of reverse causality. Passive smoking was not associated with an increased risk of pneumonia. Passive cigarette smoke exposure is a known risk factor for lower respiratory tract infections (LRTIs) among children [16–18], but not among adults.
Use of snuff and khat are novel associations found among women and men, respectively. Snuff use is a risk factor for oral cancer , while khat, a natural amphetamine, is associated with a range of effects from tooth decay to psychosis [20–22]. Khat, Catha edulis Forsk, is a shrub whose leaves and twigs are chewed for their stimulant effect and there is no obvious biological explanation of this association. Overall, however, drug use appeared to be a major avoidable risk factor.
History of coryza (representing URTIs) was associated with pneumonia . Viral URTIs suppress immune function leading to increased susceptibility to secondary infections. Influenza vaccine can reduce both primary pneumonia and secondary bacterial pneumonia [23–26], and may be useful to prevent CAP in adults.
Patients with a previous history of pneumonia were at a higher risk of CAP in the current study, especially those whose initial episode occurred more than 2 years previously; in previous studies the risk was higher for more recent episodes . Childhood pneumonia is associated with development of chronic lung disease and later hospitalizations with pneumonia [27–29] and in this study, 40% of cases were <30 years of age. In addition, patients with recent episodes of pneumonia are more likely to recognize the symptoms and the seriousness of the illness, and therefore more likely to seek early treatment, averting hospital admission. In Kenya, pneumococcal vaccines are rarely used in adults; however, post-hospitalization vaccination could potentially reduce the rate of recurrence with pneumonia .
The authors found that low social economic status (SES), measured directly by level of income and indirectly by proxy measures like the materials used for house construction, was not associated with pneumonia. However, higher education, increased use of matatus (minibuses for public transport) and frequent visits to a nightclub, which are all likely to be indicators of higher SES, were associated with a reduced risk of disease despite also implying more human contact and therefore, potentially, a greater risk of infection.
Indoor air pollution is a leading risk factor for respiratory diseases , including pneumonia, in children [32–34] though evidence in adults is weak . In this study, exposure to air pollution, including biomass fuels, was not associated with an increased risk of pneumonia. However, this study relied upon questionnaire methods to ascertain exposure to air pollution and this is likely to admit significant misclassification. More direct measurements of air quality would be useful to estimate the role of this risk factor .
As in other studies from developed countries [37, 38], HIV infection was associated with a 2-fold increase in risk of CAP. This effect size is likely to be an under-estimate due to the use of hospital controls, despite attempts to exclude from the control population those with HIV-related diseases. The prevalence of HIV among controls was 30.3%; population-based estimates of HIV sero-prevalence at the same time were 7.5% . Use of hospital controls also explains the seemingly protective effect of malaria infection. Infection with malaria parasites in the tropics is a common cause of presentation to hospitals with non-pneumonia syndromes. Interestingly, markers of chronic malaria infection, anemia and splenomegaly were strongly associated with pneumonia, suggesting that chronic or recurrent malaria may in fact be a risk factor for pneumonia, although splenomegaly may also be a marker of HIV or tuberculosis, both common in this population.
Evidence of BCG vaccination was associated with a 70% reduction in risk of pneumonia among men. The effect in women was smaller and non-significant. In the complementary study of pneumonia etiology conducted in the same cases, Mycobacterium tuberculosis was found in 9% . Several vaccines have demonstrated non-specific protective and harmful effects, which differ by sex [40, 41]. For example, those who develop a BCG scar following vaccination are known to be less likely to get sepsis, with the beneficial effect occurring predominantly in girls . These benefits have been observed to extend into adulthood . The WHO suggests these heterologous effects of vaccines are intriguing, currently inexplicable and “warrant further research” .
The limitation of this study is that it is an analysis of historical data and therefore, due to changes in epidemiology in the ensuing years, the relative importance of some of the observations may have changed. First, several risk factors that were identified have changed in prevalence; for example, HIV-infection and malaria have both declined and smoking has increased. While this alters the public health importance of these factors and invalidates any attempt to calculate the current population-attributable fraction for pneumonia, it does not invalidate the etiological association.
Second, temporal changes may have modified the effect of risk factors; for example, the introduction of anti-retroviral therapy reduces the risk of pneumonia in HIV-infected individuals [45, 46]. Third, changes in urbanization and lifestyle habits may have introduced new risk factors for pneumonia, which are not captured by the dataset that has been analyzed. Nonetheless, historical data such as these can offer unique insights into the epidemiology of pneumonia and can stimulate and inform new studies.
The authors believe this is the only case–control study on the risk factors of CAP ever conducted in an unselected adult population in Africa. As the major risk factors were unknown at the outset, the study examined many different exposures simultaneously. Although this leads to a risk of false-positive associations, the purpose was to scan a broad range of potential risks that could be explored and confirmed in subsequent focused studies. As such, several key risk factors have been identified that are amenable to vaccination or to changes in lifestyle habits. Furthermore, in this setting the study has demonstrated that the risk factors for pneumonia among men and women were sufficiently different that they should be investigated and managed separately.
This study was designed as a hypothesis-generating study. It has identified a number of potential risk factors that suggest that interventions that induce changes in lifestyle habits (especially smoking and the use of other drugs) may have a beneficial impact on the incidence of pneumonia in this population—these are worth considering in confirmatory studies. Previous history of pneumonia was the strongest risk factor of all in this study, suggesting a target for post-discharge vaccination.
We would like to thank the nursing and clinical staff of Coast Provincial General Hospital and Kilifi District Hospital, and the patients and their families. This paper is published with the approval of the Director, Kenya Medical Research Institute.
The work was supported by the Wellcome Trust through fellowship support for JAS (098532).
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
EM conducted the data analysis and wrote the manuscript. BL, CM, EG coordinated the hospital and lab aspects of the study. FG read and interpreted the radiographs. JAS conceived the study, coordinated the data collection and has contributed to data analysis and manuscript writing. All authors read and approved the final manuscript.
Ethics approval and consent to participate
Ethical approval for the study was obtained from the National Ethics Review Committee of the Kenya Medical Research Institute and the London School of Hygiene & Tropical Medicine Ethics Review Committee.
Consent for publication
The authors declare that they have no competing interests.
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